
Nitrogen Fixation - the microbial conversion of molecular nitrogen (N2) to ammonia (NH3). Ammonia exists in solution as the ammonium ion (NH4+). "Fixation" converts nitrogen gas to a salt that higher organisms can use. In other words, higher organisms are completely dependent on microorganisms for the nitrogen atoms in their proteins, nucleic acids, etc.
Nitrogen Assimilation - ammonia can be incorporated into organic molecules (R-NH2) such as nucleic acids.
Deamination - conversely, organic molecules containing nitrogen are deaminated during decomposition of organic materials, producing ammonia.
Nitrification - soil bacteria collaborate to oxidize ammonia. The first oxidation product is the nitrite anion (NO2-) produced by bacteria primarily of the genus Nitrosomonas. Nitrite is further oxidized by bacteria primarily of the genus Nitrobacter, producing the nitrate (NO3-) anion.
Denitrification (or nitrate reduction) - dissimilative nitrate reduction involves the microbial reduction of nitrate, producing nitrogen gas. Plants are able to do assimilative nitrate reduction, i.e. they use nitrate as a nitrogen source by reducing it and incorporating the nitrogen atoms into organic molecules.
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