PSEUDOMONAS

ENVIRONMENTAL MICROBIOLOGY

BIOL/CEE/CSES/ENSC 4164




This webpage was created by Charles Hagedorn, last updated July 2008.


1. Identifying Characteristics

  • Strictly aerobic.
  • Straight or slightly curved rods, but not helical.
  • 0.5-1.0 um x 1.5-5.0 um in size.
  • No resting stages or spores are known.
  • Cells stain Gram negative.
  • Nearly all species are motile.
  • Many species are also denitrifiers.
  • Chemoorganotrophic.
  • No unusual structures are formed.
  • Catalase positive.
  • Oxidase positive or negative.
  • The percent G+C ranges from 58 to 70%.
  • Colonies are usually white to cream to yellow-pigmented.
  • Many species produce extracellular fluorescent pigments.

The left image shows P. fluorescens under phase contrast microscopy (100X).

 

 

2. Taxonomic Description

Many species accumulate poly-beta-hydroxybutyrate as carbon reserve material, which appears as sudanophilic inclusions. They do not produce prosthecae and are not surrounded by sheaths. Motility occurs by one or several polar flagella; they are rarely non-motile. In some species lateral flagella of shorter wavelength may also be formed. Metabolism is strictly areobic and respiratory with oxygen as the terminal electron acceptor; in some cases nitrate can be used as an alternate electron acceptor, allowing growth to ocur anaerobically. Most species fail to grow under acidic conditions (pH 4.5). Primarily chemoorganotrophic; some rare species are facultative chemoautotrophs, able to use hydrogen or methane as energy sources.

There are over 230 described species in the genus Pseudomonas. Approximately 50 species are divided into five major subgroups with the fluorescent group being the largest (roughly 24 species). Because there are so many strains within these subgroups that differ only in minor biochemical properties, these are further divided into biovars instead of an endless list of closely related species. For example, P. fluorescens contains 5 biovars.

The top-left image shows a typical gram-negative stain of a Psuedomonas culture and the bottom-left image shows P. fluorescens under electron microscopy (65,000X).

The studies on the taxonomy of this complicated genus groped their way in the dark while following the classical procedures developed for the description and identification of the organisms involved in sanitary bacteriolgy during the first decades of the twentieth century. This situation sharply changed with the proposal to introduce as the central criterion the similarities in the composition and sequences of macromolecules components of the ribosomal RNA. The new methodology clearly showed that the genus Pseudomonas, as classically defined, consisted in fact of a conglomerate of genera that could clearly be separated into five so-called rRNA homology groups. Moreover, the taxonomic studies suggested an approach that might proved useful in taxonomic studies of all other prokaryotic groups. A few decades after the proposal of the new genus Pseudomonas by Migula in 1894, the accumulation of species names assigned to the genus reached alarming proportions. At the present moment, the number of species in the current list has contracted more than tenfold. In fact, this approximated reduction may be even more dramatic if one considers that the present list contains many new names, i.e., relatively few names of the original list survived in the process. The new methodology and the inclusion of approaches based on the studies of conservative macromolecules other than rRNA components, constitutes an effective prescription that helped to reduce Pseudomonas nomenclatural hypertrophy to a manageable size.

 

3. Isolation and Ecology

Selective media are available and, on isolation, Pseudomonas colonies may be nearly colorless, but white, off-white, cream, and yellow colony pigmentation is common. Halos of water soluble pigments (usually yellow) around colonies are frequently seen. Fluorescent colonies can be readily observed under ultraviolet light.

Widely distributed in nature, some species are pathogenic for humans, animals, or plants. The pseudomonads are the largest group of Gram negative aerobic heterotrophic bacteria found in soil, several species have been described as aquatic, and many are associated with the rhizosphere of plants. They have been widely studied because of the amazing metabolic diversity within this genus. The pseudomonads have been heavily used in biological disease control and bioremediation. The literature on degradation of organic compounds probably contains more citations on Pseudomonas than any other bacterial genus.

The image at the top-left shows a typical Pseudomonas culture on tryptic soy agar, while the image at the bottom-left shows P. fluorescens on a selective medium that enhances pigmentation and fluorescence. The water soluble yellow pigment is clearly visible.


4. History

Pseudomonad literally means 'false unit', being derived from the Greek pseudo (ψευδο 'false') and monas (μονάς / μονάδα 'a single unit'). The term "monad" was used in the early history of microbiology to denote single-celled organisms.

Because of their widespread occurrence in water, the pseudomonads were observed early in the history of microbiology. The generic name Pseudomonas created for these organisms was defined in rather vague terms in 1894 as a genus of Gram-negative, rod-shaped and polar-flagella bacteria. Soon afterwards, a very large number of species was assigned to the genus. Pseudomonads were isolated from many natural niches and a large number of species names was originally assigned to the genus. New methodology and the inclusion of approaches based on the studies of conservative macromolecules have reclassified many strains.

Pseudomonas aeruginosa is increasingly recognized as an emerging opportunistic pathogen of clinical relevance. Several different epidemiological studies indicate that antibiotic resistance is increasing in clinical isolates.

In the year 2000, the complete genome sequence of a Pseudomonas species was determined; more recently the sequence of other strains have been determined including P. aeruginosa strains PAO1 (2000), P. putida KT2440 (2002), P. fluorescens Pf-5 (2005), P. syringae pathovar tomato DC3000 (2003), P. syringae pathovar syringae B728a (2005), P. syringae pathovar phaseolica 1448A (2005), P. fluorescens PfO-1 and P. entomophila L48. An article published in the journal Science in 2008 showed that Pseudomonas may be the most common nucleator of ice crystals in clouds, thereby being of utmost importance to the formation of snow and rain around the world.



5. Additional Sources of Information

Anzai Y, Kim H, Park, JY, Wakabayashi H (2000). "Phylogenetic affiliation of the pseudomonads based on 16S rRNA sequence". Int J Syst Evol Microbiol 50: 1563–89. PMID 10939664.

Atlas, R.M. 1993. Handbook of Microbiological Media. CRC Press. Boca Raton, Florida. 1079 pp.

Cornelis P (editor). (2008). Pseudomonas: Genomics and Molecular Biology, 1st ed., Caister Academic Press. ISBN 978-1-904455-19-6. 

Eldere, J. van. "Multicentre surveillance of Pseudomonas aeruginosa susceptibility patterns in nosocomial infections http://jac.oxfordjournals.org/cgi/content/abstract/51/2/347" J. Antimicrobial Chemotherapy (2003) 51 347-352

Galli, E., S. Silver, and B. Witholt. 1992. Pseudomonas: Molecular Biology and Biotechnology. American Society for Microbiology Press. Washington, D.C. 443 pp.

Gould, W.D., C. Hagedorn, T.R. Bardinelli, and R.M. Zablotowicz. 1985. A selective medium for enumeration and recovery of fluorescent pseudomonads from various habitats. Appl. Environ. Microbiol. 49:28-32.

Holt, J.G., N.R. Krieg, P.H.A. Sneath, J.T. Staley, and S.T. Williams. 1994. Bergey's Manual of Determinative Bacteriology. Ninth Edition. Williams and Wilkins. Baltimore, Maryland. 787 pp.

"The phylogeny of the genera Chryseomonas, Flavimonas, and Pseudomonas supports synonymy of these three genera" (1997). Int J Syst Bacteriol 47 (2): 249–51. PMID 9103607. 


6. Links to Other Sites on Pseudomonas

TODAR This link leads to Pseudomonas aeruginosa in Todar's Online Textbook of Bacteriology.


BIONET This site contains access to a newsgroup dedicated to Pseudomonas and a WAIS search engine to locate recent research articles on this genus.


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